I personally do not use Discord for support unfortunately. I logged out of the PhantomBot Discord some time ago.
I think just seeing the directories and a file is enough for me to take a guess. Replace
/bot/directory with the path to your bot directory.
cd /bot/directory find . -type d -ls find . -name phantombot.db -ls ls -l /bot/directory
View the service file (I do not know where you created it). I believe you are starting the bot via
service by the looks of it.